Robert A. Petit III, PhD

Robert A. Petit III, PhD rpetit3

Bioinformatician studying bacterial genomics and developer of Bactopia and Staphopia workflows.

Wyoming Public Health Laboratory
Microbiology Laboratories
Cheyenne, WY
robbie.petit@gmail.com
Curriculum Vitae
Resume

Organizations

Mycobacterium tuberculosis epidemiology in Oman: whole-genome sequencing uncovers transmission pathways.
Hamza A Babiker, Amina Al-Jardani, Saleh Al-Azri, Robert A Petit III, Eltaib Saad, Sarah Al-Mahrouqi, Reham A.H. Mohamed, Salama Al-Hamidhi, Abdullah A. Balkhair, Najma Al Kharusi, Laila Al Balushi, Samiya Al Zadjali, Lucía Pérez-Pardal, Albano Beja-Pereira, Ahmed Babiker
Published September 28, 2023 in Microbiology Spectrum
oman tuberculosis wgs
Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes.
Rohan S Mehta, Robert A Petit III, Timothy D Read, Daniel B Weissman
Published June 9, 2023 in BMC Bioinformatics
accessory big data staph
Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains
Abraham G. Moller, Robert A. Petit III, Michelle H. Davis, Timothy D. Read
Published January 23, 2023 in Microbiology Spectrum
amplicon phage staph
Unsuspected Clonal Spread of Methicillin-Resistant Staphylococcus aureus Causing Bloodstream Infections in Hospitalized Adults Detected Using Whole Genome Sequencing
Brooke M. Talbot, Natasia F. Jacko, Robert A Petit III, David A. Pegues, Margot J. Shumaker, Timothy D. Read, Michael Z. David
Published December 15, 2022 in Clinical Infectious Diseases
mrsa staph virulence
Clinical and Genomic Epidemiology of mcr-9-Carrying Carbapenem-Resistant Enterobacterales Isolates in Metropolitan Atlanta, 2012 to 2017.
Ahmed Babiker, Chris Bower, Joseph D. Lutgring, Robert A. Petit III, Jessica Howard-Anderson, Uzma Ansari, Gillian McAllister, Michelle Adamczyk, Erin Breaker, Sarah W. Satola, Jesse T. Jacob, Michael H. Woodworth
Published July 20, 2022 in Microbiology Spectrum
cre mcr resitance
Association of Secretor Status and Recent Norovirus Infection With Gut Microbiome Diversity Metrics in a Veterans Affairs Population
Jordan A Johnson, Timothy D Read, Robert A Petit III, Vincent C Marconi, Kathryn L Meagley, Maria C Rodriguez-Barradas, David O Beenhouwer, Sheldon T Brown, Mark Holodniy, Cynthia A Lucero-Obusan, Patricia Schirmer, Jessica M Ingersoll, Colleen S Kraft, Frederick H Neill, Robert L Atmar, Anita K Kambhampati, Jordan E Cates, Sara A Mirza, Aron J Hall, Cristina V Cardemil, Benjamin A Lopman
Published May 1, 2022 in Open Forum Infectious Diseases
microbiome norvius secretor
Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic
Ahmed Babiker, Michael A Martin, Charles Marvil, Stephanie Bellman, Robert A Petit III, Heath L Bradley, Victoria D Stittleburg, Jessica Ingersoll, Colleen S Kraft, Yan Li, Jing Zhang, Clinton R Paden, Timothy D Read, Jesse J Waggoner, Katia Koelle, Anne Piantadosi
Published February 15, 2022 in Virus Evolution
pandemic sars-cov-2 transmission
Species-Wide Phylogenomics of the Staphylococcus aureus Agr Operon Revealed Convergent Evolution of Frameshift Mutations
Vishnu Raghuram, Ashley M. Alexander, Hui Qi Loo, Robert A. Petit III, Joanna B. Goldberg, Timothy D. Read
Published January 19, 2022 in Microbiology Spectrum
agr staph virulence
Species-Scale Genomic Analysis of Staphylococcus aureus Genes Influencing Phage Host Range and Their Relationships to Virulence and Antibiotic Resistance Genes
Abraham G. Moller, Robert A. Petit III, Timothy D. Read
Published January 18, 2022 in mSystems
phage staph virulence
hAMRoaster: a tool for comparing performance of AMR gene detection software
Emily F Wissel, Brooke M Talbot, Noriko A B Toyosato, Robert A Petit III, Vicki Hertzberg, Anne Dunlop, Timothy D Read
Published January 13, 2022 in bioRxiv
amr bioinformatics report

Robert A. Petit III, PhD rpetit3

Organizations

Mycobacterium tuberculosis epidemiology in Oman: whole-genome sequencing uncovers transmission pathways.

Detecting patterns of accessory genome coevolution in Staphylococcus aureus using data from thousands of genomes.

Development of an amplicon nanopore sequencing strategy for detection of mutations conferring intermediate resistance to vancomycin in Staphylococcus aureus strains

Unsuspected Clonal Spread of Methicillin-Resistant Staphylococcus aureus Causing Bloodstream Infections in Hospitalized Adults Detected Using Whole Genome Sequencing

Clinical and Genomic Epidemiology of mcr-9-Carrying Carbapenem-Resistant Enterobacterales Isolates in Metropolitan Atlanta, 2012 to 2017.

Association of Secretor Status and Recent Norovirus Infection With Gut Microbiome Diversity Metrics in a Veterans Affairs Population

Unrecognized introductions of SARS-CoV-2 into the US state of Georgia shaped the early epidemic

Species-Wide Phylogenomics of the Staphylococcus aureus Agr Operon Revealed Convergent Evolution of Frameshift Mutations

Species-Scale Genomic Analysis of Staphylococcus aureus Genes Influencing Phage Host Range and Their Relationships to Virulence and Antibiotic Resistance Genes

hAMRoaster: a tool for comparing performance of AMR gene detection software